Guilt by Association: The Culture of Accusation and the American Anthropological Association's Investigation of Darkness in El Dorado

The American Anthropological Association's investigation of the charges in Darkness in El Dorado (Tierney 2000) found that the late James Neel and Napoleon Chagnon harmed the Yanomami in the course of their research in Venezuela and Brazil, and that Chagnon had violated the ethics code of the association. The association's inquiry contravened its own policy prohibiting ethics adjudications and was structured not by the standards of an objective investigation but by aspects of contemporary anthropology. Moralized approaches to information and postmodern rejection of objectivity mark the language and methods of the inquiry. The investigating task force did not observe reasonable standards of evidence, the targets of the investigation were not represented, and task force members were compromised by conflicts of interest. The investigation and its collateral activities reflect a culture of accusation and an anthropology uncertain of its ethical or scientific stature.     

Delineation of the European Armillaria species based on the sequences of the internal transcribed spacer (ITS) of ribosomal DNA

Variation within the internal transcribed spacer (ITS) of the ribosomal RNA gene of 15 isolates representing seven European Armillaria species, was examined by sequencing of the PCR-amplified products. The analysis of an 744-bp region showed that the 5.8S gene appeared to be highly conserved in the 15 isolates and in other Basidiomycetes and Ascomycetes, whereas ITS1 and especially ITS2 spacers exhibited polymorphisms due to base substitutions, insertions or deletions of up to eight nucleotides. An initial dendrogram for the full sequence was drawn using cluster analysis (UPGMA), and a tree was constructed using the maximum parsimony method. Both methods indicated that the isolates could be divided into four major groups. One group, consisting of A. ectypa , was distinct from all the other species. Examination of the other groups indicated that A. tabescens and A. mellea were in a separated cluster, with a significant variation between the two isolates of the latter species. A. gallica and A. cepistipes constituted another closely related group distinguishable from A. ostoyae and A. borealis , these latter two species exhibiting the highest similarity. The results are consistent with, and discussed in regard to, the relationships estimated previously by pairing tests, morphological and physiological comparisons, as well as by restriction fragment length polymorphism of the rDNA.     

Comparative phylogeography and the identification of genetically divergent areas for conservation

Genetic diversity is recognized as a fundamental component of biodiversity and its protection is incorporated in several conventions and policies. However, neither the concepts nor the methods for assessing conservation value of the spatial distribution of genetic diversity have been resolved. Comparative phylogeography can identify suites of species that have a common history of vicariance. In this study we explore the strengths and limitations of Faith's measure of 'Phylogenetic Diversity' (PD) as a method for predicting from multiple intraspecific phylogeographies the underlying feature diversity represented by combinations of areas. An advantage of the PD approach is that information on the spatial distribution of genetic diversity can be combined across species and expressed in a form that allows direct comparison with patterns of species distributions. It also seeks to estimate the same parameter, feature diversity, regardless of the level of biological organization. We extend the PD approach by using Venn diagrams to identify the components of PD, including those unique to or shared among areas and those which represent homoplasy on an area tree or which are shared across all areas. PD estimation should be complemented by analysis of these components and inspection of the contributing phylogeographies. We illustrate the application of the approach using mtDNA phylogeographies from vertebrates resident in the wet tropical rainforests of north-east Queensland and compare the results to biodiversity assessments based on the distribution of endemic vertebrate species. The genetic vs. species approaches produce different assessments of conservation value, perhaps reflecting differences in the temporal and spatial scale of the determining processes. The two approaches should be seen as complementary and, in this case, conservation planning should incorporate information on both dimensions of biodiversity.     

Habitat selection and breeding success in Yellow-legged Gulls Larus cachinnans

The habitat selection and breeding performance of Yellow-legged Gulls Larus cachinnans were studied in the Medes Islands colony, northeastern Spain, during 1995 and 1996. Of the three main habitats on the islands (shrubs, grass and bare areas), gulls first occupied those with the highest percentage of tall vegetation. Gulls tended to select nest sites with 20–75% cover despite great differences in the cover in the habitats and territories, suggesting that the presence of a suitable nest site may play a major role in the choice of breeding habitat. Nest-site tenacity did not influence the preferences of gulls at any level since the same pattern of choice was observed in an area subjected to annual culls (i.e. where most of the breeding pairs were culled annually and replaced by naive birds). In spite of great differences in the physical characteristics of the habitats, little difference was found in breeding performance of the gulls between habitats. Gulls nesting in the least preferred habitat (i.e. mainly bare) had smaller clutches than those nesting in the other two habitats, possibly as a result of their later seasonal laying. Despite the similar breeding success in different habitats, gulls did not seem to distribute according to the ideal free model reported for Herring Gulls Larus argentatus since the density in the preferred habitat (i.e. shrubs) was never higher than in the other two. We suggest that the habitat selection by Yellow-legged Gulls within the colony could follow an ideal despotic distribution.     

Peroxidases in Relation to Removal of Dormancy and Germination of Apple Embryos

The changes in germination, peroxidase activity and isoperoxidase spectrum have been studied in apple embryos at 5°C (stratification) and at 20°C in the presence or absence of seed coats. The embryo dormancy is progressively released at 5°C, but not at 20°C. The peroxidase activity in embryos covered with seed coats is very low at 5°C as well as at 20°C which corresponds to a restricted number of isoenzymes. In isolated embryos the peroxidase activity increases significantly. This is due to an increase in both the number and the activity of the isoperoxidases and it is more pronounced at 20°C than at 5°C. The obtained results suggest that the soluble peroxidases are not involved in the process of the release of embryo dormancy. The variations observed are attributed to the growth process following germination, which can occur even at low temperature.     

Fine Structure of the Mastigont System in Tritrichomonas muris (Grassi)*

SYNOPSIS. Tritrichomonas muris shares many fine-structural details with the previously described members of the family Trichomonadidae, and especially with the organisms belonging to the subfamily Tritrichomonadinae. Among the features which T. muris has in common with all Trichomonadidae and in all probability with other Trichomonadida are the arrangement and structure of: the kinetosomes; many rootlet filaments, including the sigmoid filaments of kinetosome #2; the parabasal apparatus; and the pelta-axostyle complex. The structures which T. muris-type flagellates share with other Tritrichomonadinae, and especially with Tritrichomonas augusta-type species (including T. foetus), but not with Trichomonadinae that have been studied to date, are: the Type A costa; a comb-like structure, which appears to have replaced the costal base of Trichomonadinae and of Hypotrichomonas; the suprakinetosomal body, rudimentary in T. muris; and the infrakinetosomal body. The undulating membrane, like that of T. augusta-type organisms, consists of a proximal and a distal part. The proximal part, which contains the proximal marginal lamella, is less developed in T. muris than in T. augusta-type flagellates, being represented by a relatively low ridge for the entire length of the organism. The distal part of the membrane in T. muris, on the other hand, is more highly developed; it is a heavy cord, with a distal marginal lamella which consists of a large triangular organelle having a highly ordered structure and 2 less well defined cords distal to this organelle. The tubules of the recurrent flagellum occupy the area distal to the cords. The sigmoid filaments of kinetosome #2, unlike those of other Trichomonadidae examined to date, extend posteriorly to the peltar-axostylar junction; they seem to terminate within the cytoplasm near, but not connected to the axostyle. In addition to the Type A costa, there is a small rootlet filament, which appears to be homologous to the rudimentary costa noted in Hypotrichomonas. Some of the paraxostylar and paracostal granules consist of an outer, relatively dense layer and an inner “core” of moderate density; between the 2 there is a lucent ring. The discussion deals in some detail with the possible nature of the paraxostylar and paracostal granules in trichomonads. The taxonomic status of Tritrichomonas cricetus (Wantland) [Tritrichomonas criceti (Wantland) emend. Levine] and Trichomonas criceti Ray & Sen Gupta is discussed in an appendix; it is concluded that both of these names are synonyms of T. muris (Grassi).